Reference

Majority of the text and many figures were taken from:
Jobling, Mark, et al. "HUMAN EVOLUTIONARY GENETICS Second Edition." HUMAN EVOLUTIONARY GENETICS, SECOND EDITION (2014): 601-608.

And various other sources:

• https://docs.readthedocs.io/en/stable/gsoc.html
• https://comppopgenworkshop2019.readthedocs.io/en/latest/contents/03_pca/pca.html
• https://www.cog-genomics.org/plink/1.9
• https://www.cyberciti.biz/faq/how-to-tar-a-file-in-linux-using-command-line/
• http://zzz.bwh.harvard.edu/plink/data.shtml#ped
• https://www.cog-genomics.org/plink/1.9/formats#map
• https://www.mv.helsinki.fi/home/mjxpirin/GWAS_course/material/GWAS5.html
• https://www.sciencedirect.com/science/article/pii/S0002929714004273
• https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4001853/
• https://github.com/GELOG/adam-ibs/wiki/Plink-IBS-MDS-Tutorial
• https://www.illumina.com/science/technology/microarray.html
• https://www.youtube.com/watch?v=lVG04dAAyvY&ab_channel=Illumina
• https://reich.hms.harvard.edu/allen-ancient-dna-resource-aadr-downloadable-genotypes-present-day-and-ancient-dna-data
• https://sitn.hms.harvard.edu/flash/2017/science-genetics-reshaping-race-debate-21st-century/
• https://www.sciencedirect.com/science/article/pii/S0002929720302056?via%3Dihub
• https://www.nature.com/articles/s41586-021-04008-x
• https://www.nature.com/articles/d41586-021-03542-y
• https://www.nature.com/articles/s10038-020-00862-1
• https://www.ncbi.nlm.nih.gov/snp/
• https://www.linuxjournal.com/content/shell-process-redirection
• Marees, Andries T., et al. "A tutorial on conducting genome-wide association studies: Quality control and statistical analysis." International journal of methods in psychiatric research 27.2 (2018): e1608.
• Raj, Anil, Matthew Stephens, and Jonathan K. Pritchard. "fastSTRUCTURE: variational inference of population structure in large SNP data sets." Genetics 197.2 (2014): 573-589.